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Biclustering strategies for genetic marker selection in gynecologic tumor cell lines

Alevyzaki Androniki, Sfakianakis Stylianos, Bei Aikaterini, Obermayr Eva, Zeillinger Robert, Fotiadis D. I., Zervakis Michail

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URIhttp://purl.tuc.gr/dl/dias/1B73E0C5-1C73-41F7-A42D-2C44251C4F9E-
Identifierhttps://ieeexplore.ieee.org/document/7590977/-
Identifierhttps://doi.org/10.1109/EMBC.2016.7590977-
Languageen-
Extent4 pagesen
TitleBiclustering strategies for genetic marker selection in gynecologic tumor cell linesen
CreatorAlevyzaki Andronikien
CreatorΑλεβυζακη Ανδρονικηel
CreatorSfakianakis Stylianosen
CreatorΣφακιανακης Στυλιανοςel
CreatorBei Aikaterinien
CreatorΜπεη Αικατερινηel
CreatorObermayr Evaen
CreatorZeillinger Roberten
CreatorFotiadis D. I.en
CreatorZervakis Michailen
CreatorΖερβακης Μιχαηλel
PublisherInstitute of Electrical and Electronics Engineersen
Content SummaryOver the past few decades great interest has been focused on cell lines derived from tumors, because of their usability as models to understand the biology of cancer. At the same time, advanced technologies such as DNA-microarrays have been broadly used to study the expression level of thousands of genes in primary tumors or cancer cell lines in a single experiment. Results from microarray analysis approaches have provided valuable insights into the underlying biology and proven useful for tumor classification, prognostication and prediction. Our approach utilizes biclustering methods for the discovery of genes with coherent expression across a subset of conditions (cell lines of a tumor type). More specifically, we present a novel modification on Cheng & Church's algorithm that searches for differences across the studied conditions, but also enforces consistent intensity characteristics of each cluster within each condition. The application of this approach on a gynecologic panel of cell lines succeeds to derive discriminant groups of compact bi-clusters across four types of tumor cell lines. In this form, the proposed approach is proven efficient for the derivation of tumor-specific markers. en
Type of ItemΠλήρης Δημοσίευση σε Συνέδριοel
Type of ItemConference Full Paperen
Licensehttp://creativecommons.org/licenses/by/4.0/en
Date of Item2018-10-09-
Date of Publication2016-
SubjectGene expressionen
SubjectCanceren
SubjectTumorsen
SubjectClustering algorithmsen
SubjectArtificial intelligenceen
SubjectElectronic mailen
Bibliographic CitationA. Alevyzaki, S. Sfakianakis, E. S. Bei, E. Obermayr, R. Zeillinger, D. Fotiadis, M. Zervakis, "Biclustering strategies for genetic marker selection in gynecologic tumor cell lines," in 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016, pp. 1430-1433. doi: 10.1109/EMBC.2016.7590977en

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