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A methodology for open information extraction and representation from large scientific corpora: the CORD-19 data exploration use case

Papadopoulos Dimitrios, Papadakis Nikolaos, Litke Antonis

Απλή Εγγραφή


URIhttp://purl.tuc.gr/dl/dias/01DB0838-84BF-4BE3-A9D6-3C5449AC3301-
Αναγνωριστικόhttps://doi.org/10.3390/app10165630-
Αναγνωριστικόhttps://www.mdpi.com/2076-3417/10/16/5630/htm-
Γλώσσαen-
Μέγεθος30 pagesen
Μέγεθος2,45 megabytesen
ΤίτλοςA methodology for open information extraction and representation from large scientific corpora: the CORD-19 data exploration use caseen
ΔημιουργόςPapadopoulos Dimitriosen
ΔημιουργόςΠαπαδοπουλος Δημητριοςel
ΔημιουργόςPapadakis Nikolaosen
ΔημιουργόςLitke Antonisen
ΕκδότηςMDPIen
ΠερίληψηThe usefulness of automated information extraction tools in generating structured knowledge from unstructured and semi-structured machine-readable documents is limited by challenges related to the variety and intricacy of the targeted entities, the complex linguistic features of heterogeneous corpora, and the computational availability for readily scaling to large amounts of text. In this paper, we argue that the redundancy and ambiguity of subject–predicate–object (SPO) triples in open information extraction systems has to be treated as an equally important step in order to ensure the quality and preciseness of generated triples. To this end, we propose a pipeline approach for information extraction from large corpora, encompassing a series of natural language processing tasks. Our methodology consists of four steps: i. in-place coreference resolution, ii. extractive text summarization, iii. parallel triple extraction, and iv. entity enrichment and graph representation. We manifest our methodology on a large medical dataset (CORD-19), relying on state-of-the-art tools to fulfil the aforementioned steps and extract triples that are subsequently mapped to a comprehensive ontology of biomedical concepts. We evaluate the effectiveness of our information extraction method by comparing it in terms of precision, recall, and F1-score with state-of-the-art OIE engines and demonstrate its capabilities on a set of data exploration tasks.en
ΤύποςPeer-Reviewed Journal Publicationen
ΤύποςΔημοσίευση σε Περιοδικό με Κριτέςel
Άδεια Χρήσηςhttp://creativecommons.org/licenses/by/4.0/en
Ημερομηνία2022-02-08-
Ημερομηνία Δημοσίευσης2020-
Θεματική ΚατηγορίαInformation extractionen
Θεματική ΚατηγορίαTriple extractionen
Θεματική ΚατηγορίαBioinformaticsen
Θεματική ΚατηγορίαData miningen
Βιβλιογραφική ΑναφοράD. Papadopoulos, N. Papadakis, and A. Litke, “A methodology for open information extraction and representation from large scientific corpora: the CORD-19 data exploration use case,” Appl. Sci., vol. 10, no. 16, Aug. 2020, doi: 10.3390/app10165630en

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